ENSMUSG00000093989


Mus musculus

Features
Gene ID: ENSMUSG00000093989
  
Biological name :Rnasek
  
Synonyms : Q8K3C0 / ribonuclease, RNase K / Rnasek
  
Possible biological names infered from orthology : Q6P5S7 / ribonuclease K
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B3
Gene start: 70238124
Gene end: 70239842
  
Corresponding Affymetrix probe sets: 10387816 (MoGene1.0st)   1426745_at (Mouse Genome 430 2.0 Array)   1442441_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000135891
Ensembl peptide - ENSMUSP00000048271
Ensembl peptide - ENSMUSP00000135383
NCBI entrez gene - 52898     See in Manteia.
MGI - MGI:106369
RefSeq - NM_173742
RefSeq Peptide - NP_776103
swissprot - Q8K3C0
swissprot - H3BJV0
swissprot - H3BLR9
Ensembl - ENSMUSG00000093989
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q0P442ENSDARG00000104458Danio rerio
 Q0P467ENSDARG00000069461Danio rerio
 Q6P5S7ENSG00000219200Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8K3C0 / Gm21988 / Ribonuclease kappa / Q6P5S7* / RNASEK* / ribonuclease K*ENSMUSG00000040904100


Protein motifs (from Interpro)
Interpro ID Name
 IPR026770  Ribonuclease kappa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0004521 endoribonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0008347 decreased gamma-delta T cell number "reduced number of immature or mature T cells expressing an gamma-delta T cell receptor complex" [CL:0000798, ISBN:0781735149]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Rad9atm1.1(KOMP)Wtsi/Rad9atm1.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Rad9atm1.1(KOMP)Wtsi/Bay

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr