ENSMUSG00000103255


Mus musculus

Features
Gene ID: ENSMUSG00000103255
  
Biological name :Pcdhac1
  
Synonyms : Pcdhac1 / protocadherin alpha subfamily C, 1
  
Possible biological names infered from orthology : Q9H158
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B2
Gene start: 37090013
Gene end: 37187657
  
Corresponding Affymetrix probe sets: 1420798_s_at (Mouse Genome 430 2.0 Array)   1424341_s_at (Mouse Genome 430 2.0 Array)   1425017_at (Mouse Genome 430 2.0 Array)   1451769_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000007584
NCBI entrez gene - 353236     See in Manteia.
MGI - MGI:1891442
RefSeq - NM_001003671
RefSeq Peptide - NP_001003671
swissprot - Q91Y10
Ensembl - ENSMUSG00000103255
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX005294.2ENSDARG00000109361Danio rerio
 pcdh1g3ENSDARG00000099646Danio rerio
 pcdh1g32ENSDARG00000100829Danio rerio
 pcdh2ab10ENSDARG00000103906Danio rerio
 pcdh2acENSDARG00000101318Danio rerio
 pcdh2acENSDARG00000099783Danio rerio
 ENSGALG00000038693Gallus gallus
 ENSGALG00000040751Gallus gallus
 Q9H158ENSG00000248383Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030742  Protocadherin alpha-C1
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: a1R/a1R
Genetic Background: involves: 101/Rl * C3H/Rl

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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