553516


Danio rerio (NCBI)

Features
Gene ID: 553516
  
Biological name :
  
Synonyms : tdp2b / tdp2|ttrap|ttrapl / tyrosyl-DNA phosphodiesterase 2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio (NCBI)
  
Chr. number:
Strand:
Band:
Gene start:
Gene end:
  
Corresponding Affymetrix probe sets: Dr.18071.1.S1_at (Zebrafish Array)   Dr.18071.2.A1_at (Zebrafish Array)   
  
Cross references: RefSeq - 119226210
RefSeq - NC_007130.7
RefSeq - NP_001073171.1
RefSeq - NW_018395052.1
RefSeq - NM_001079703.1
  
See co-cited genes in PubMed


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006302 double-strand break repair ISS
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway IMP
 biological_processGO:0060027 convergent extension involved in gastrulation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016605 PML body ISS
 molecular_functionGO:0000287 magnesium ion binding ISS
 molecular_functionGO:0003677 DNA binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding ISS
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030145 manganese ion binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070260 5"-tyrosyl-DNA phosphodiesterase activity ISS


Pathways (from Reactome)
Pathway description
No match


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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