ENSDARG00000001220


Danio rerio

Features
Gene ID: ENSDARG00000001220
  
Biological name :mycbp2
  
Synonyms : MYC binding protein 2 / mycbp2
  
Possible biological names infered from orthology : MYC binding protein 2, E3 ubiquitin protein ligase / O75592
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 17045875
Gene end: 17286330
  
Corresponding Affymetrix probe sets: Dr.17163.1.S1_at (Zebrafish Array)   NM_001012247_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000028785
NCBI entrez gene - 368439     See in Manteia.
RefSeq - NM_001012247
RefSeq Peptide - NP_001012247
swissprot - F1RD40
ZFIN ID - ZDB-GENE-030616-132
Ensembl - ENSDARG00000001220
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MYCBP2ENSGALG00000016915Gallus gallus
 MYCBP2ENSG00000005810Homo sapiens
 Mycbp2ENSMUSG00000033004Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ibtk / inhibitor of Bruton agammaglobulinemia tyrosine kinase / Q6ZPR6* / Q9P2D0* / inhibitor of Bruton tyrosine kinase*ENSDARG000000744246


Protein motifs (from Interpro)
Interpro ID Name
 IPR000408  Regulator of chromosome condensation, RCC1
 IPR001841  Zinc finger, RING-type
 IPR003646  SH3-like domain, bacterial-type
 IPR004939  APC10/DOC domain
 IPR008979  Galactose-binding-like domain superfamily
 IPR009091  Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
 IPR012983  PHR
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007411 axon guidance IMP
 biological_processGO:0016198 axon choice point recognition IMP
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0021986 habenula development IMP
 biological_processGO:0031290 retinal ganglion cell axon guidance IMP
 biological_processGO:0042068 regulation of pteridine metabolic process IMP
 biological_processGO:0048066 developmental pigmentation IMP
 cellular_componentGO:0005737 cytoplasm IDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000359 habenular commissure habenular commissure aplastic , abnormal
Show

 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism viability , abnormal
whole organism low saturation , abnormal
Show

 ZFA:0009090 pigment cell pigment cell quality , abnormal
Show

 ZFA:0009198 xanthophore xanthophore quality , abnormal
xanthophore low saturation , abnormal
xanthophore decreased pigmentation , abnormal
xanthophore decreased size , abnormal
xanthophore increased distribution , abnormal
xanthophore increased fluorescence , abnormal
xanthophore dendrite distributed , abnormal
xanthophore pigment granule condensed , abnormal
xanthophore pigment granule decreased amount , abnormal
xanthophore decreased amount , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell axon aggregated , abnormal
retinal ganglion cell axon displaced to eye ipsilateral side, abnormal
retinal ganglion cell axon irregular spatial pattern , abnormal
retinal ganglion cell axon displaced , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr