ENSDARG00000001656


Danio rerio

Features
Gene ID: ENSDARG00000001656
  
Biological name :psmb13a
  
Synonyms : proteasome subunit beta 13a / psmb13a
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 7111779
Gene end: 7144585
  
Corresponding Affymetrix probe sets: Dr.4760.1.A1_at (Zebrafish Array)   NM_131677_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000001256
Ensembl peptide - ENSDARP00000125699
NCBI entrez gene - 64280     See in Manteia.
RefSeq - NM_131677
RefSeq Peptide - NP_571752
swissprot - I3IS35
swissprot - Q1LWY1
ZFIN ID - ZDB-GENE-001208-2
Ensembl - ENSDARG00000001656
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
psmb7 / proteasome subunit beta 7 / P70195* / Q99436* / Proteasome subunit beta type-7 *ENSDARG0000003796258
psmb10 / proteasome subunit beta 10 / P40306* / O35955* / AC040162.1* / Proteasome subunit beta type-10 *ENSDARG0000004378156


Protein motifs (from Interpro)
Interpro ID Name
 IPR000243  Peptidase T1A, proteasome beta-subunit
 IPR001353  Proteasome, subunit alpha/beta
 IPR016050  Proteasome beta-type subunit, conserved site
 IPR023333  Proteasome B-type subunit
 IPR024689  Proteasome beta subunit, C-terminal
 IPR029055  Nucleophile aminohydrolases, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0051603 proteolysis involved in cellular protein catabolic process IEA
 cellular_componentGO:0000502 proteasome complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005839 proteasome core complex IEA
 molecular_functionGO:0004175 endopeptidase activity IEA
 molecular_functionGO:0004298 threonine-type endopeptidase activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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