ENSDARG00000001804


Danio rerio

Features
Gene ID: ENSDARG00000001804
  
Biological name :zgc:112148
  
Synonyms : zgc:112148
  
Possible biological names infered from orthology : Q96ET8 / Q9D8T4 / Q9NYZ1 / trans-golgi network vesicle protein 23B / trans-golgi network vesicle protein 23 homolog B / trans-golgi network vesicle protein 23 homolog C / TVP23B / TVP23C / TVP23C-CDRT4 / TVP23C-CDRT4 readthrough
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 56861059
Gene end: 56871984
  
Corresponding Affymetrix probe sets: Dr.15465.1.S1_at (Zebrafish Array)   NM_001017729_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000157644
Ensembl peptide - ENSDARP00000009966
Ensembl peptide - ENSDARP00000148137
Ensembl peptide - ENSDARP00000154979
NCBI entrez gene - 550424     See in Manteia.
RefSeq - NM_001017729
RefSeq Peptide - NP_001017729
swissprot - F1QZL1
ZFIN ID - ZDB-GENE-050417-235
Ensembl - ENSDARG00000001804
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FAM18B1ENSGALG00000001335Gallus gallus
 Q96ET8ENSG00000175106Homo sapiens
 Q9NYZ1ENSG00000171928Homo sapiens
 TVP23C-CDRT4ENSG00000259024Homo sapiens
 Q9D8T4ENSMUSG00000014177Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tvp23b / trans-golgi network vesicle protein 23 homolog B (S. cerevisiae) / Q96ET8* / Q9NYZ1* / Q9D8T4* / TVP23C* / TVP23C-CDRT4* / TVP23C-CDRT4 readthrough* / trans-golgi network vesicle p...ENSDARG0000005706064


Protein motifs (from Interpro)
Interpro ID Name
 IPR008564  Golgi apparatus membrane protein TVP23-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009306 protein secretion IBA
 biological_processGO:0016192 vesicle-mediated transport IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030173 integral component of Golgi membrane IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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