ENSDARG00000003153


Danio rerio

Features
Gene ID: ENSDARG00000003153
  
Biological name :nudt21
  
Synonyms : nudix hydrolase 21 / nudt21 / Q7T3C6
  
Possible biological names infered from orthology : nudix (nucleoside diphosphate linked moiety X)-type motif 21 / O43809 / Q9CQF3
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 22721551
Gene end: 22735002
  
Corresponding Affymetrix probe sets: Dr.25495.1.S1_at (Zebrafish Array)   NM_201117_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000017229
NCBI entrez gene - 394092     See in Manteia.
RefSeq - NM_201117
RefSeq Peptide - NP_957411
swissprot - B2GS95
swissprot - Q7T3C6
ZFIN ID - ZDB-GENE-040426-1316
Ensembl - ENSDARG00000003153
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUDT21ENSGALG00000003084Gallus gallus
 NUDT21ENSG00000167005Homo sapiens
 Nudt21ENSMUSG00000031754Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000086  NUDIX hydrolase domain
 IPR015797  NUDIX hydrolase-like domain superfamily
 IPR016706  Cleavage/polyadenylation specificity factor subunit 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation ISS
 biological_processGO:0006397 mRNA processing ISS
 biological_processGO:0010608 posttranscriptional regulation of gene expression ISS
 biological_processGO:0031439 positive regulation of mRNA cleavage ISS
 biological_processGO:0031442 positive regulation of mRNA 3"-end processing ISS
 biological_processGO:0051290 protein heterotetramerization ISS
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation ISS
 biological_processGO:1900365 positive regulation of mRNA polyadenylation ISS
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly ISS
 biological_processGO:2000738 positive regulation of stem cell differentiation ISS
 biological_processGO:2000975 positive regulation of pro-B cell differentiation ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005849 mRNA cleavage factor complex ISS
 cellular_componentGO:0042382 paraspeckles ISS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding ISS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0017091 AU-rich element binding ISS
 molecular_functionGO:0042802 identical protein binding ISS


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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