ENSDARG00000003382


Danio rerio

Features
Gene ID: ENSDARG00000003382
  
Biological name :cwc25
  
Synonyms : cwc25 / CWC25 spliceosome-associated protein homolog (S. cerevisiae)
  
Possible biological names infered from orthology : CWC25 spliceosome associated protein homolog / Pre-mRNA-splicing factor CWC25 homolog / Q9DBF7 / Q9NXE8
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 5709424
Gene end: 5723786
  
Corresponding Affymetrix probe sets: Dr.5534.1.S1_at (Zebrafish Array)   NM_213462_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000091697
NCBI entrez gene - 406771     See in Manteia.
RefSeq - NM_213462
RefSeq Peptide - NP_998627
swissprot - Q7ZVW8
ZFIN ID - ZDB-GENE-040426-2817
Ensembl - ENSDARG00000003382
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CWC25ENSGALG00000001624Gallus gallus
 CWC25ENSG00000273559Homo sapiens
 Cwc25ENSMUSG00000018541Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019339  CBF1-interacting co-repressor CIR, N-terminal domain
 IPR022209  Pre-mRNA splicing factor


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk non-functional , abnormal
yolk quality , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
Show

 ZFA:0000123 liver liver increased size , abnormal
liver quality , abnormal
Show

 ZFA:0000152 retina retina quality , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
head pointed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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