ENSDARG00000003827


Danio rerio

Features
Gene ID: ENSDARG00000003827
  
Biological name :snapc1b
  
Synonyms : small nuclear RNA activating complex, polypeptide 1b / snapc1b
  
Possible biological names infered from orthology : AC124712.1 / Q16533 / Q8K0S9 / small nuclear RNA activating complex polypeptide 1 / SNAPC1 / snRNA-activating protein complex subunit 1
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 37586491
Gene end: 37600600
  
Corresponding Affymetrix probe sets: Dr.9637.1.S1_at (Zebrafish Array)   NM_200254_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000023186
NCBI entrez gene - 393224     See in Manteia.
RefSeq - NM_200254
RefSeq Peptide - NP_956548
swissprot - Q7ZUP7
ZFIN ID - ZDB-GENE-040426-716
Ensembl - ENSDARG00000003827
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNAPC1ENSGALG00000011868Gallus gallus
 Q16533ENSG00000023608Homo sapiens
 AC124712.1ENSMUSG00000114046Mus musculus
 Q8K0S9ENSMUSG00000021113Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snapc1a / small nuclear RNA activating complex, polypeptide 1a / Q8K0S9* / Q16533* / SNAPC1* / AC124712.1* / snRNA-activating protein complex subunit 1 * / small nuclear RNA activating comp...ENSDARG0000002956934


Protein motifs (from Interpro)
Interpro ID Name
 IPR019188  Small nuclear RNA activating complex (SNAPc), subunit SNAP43


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042795 snRNA transcription by RNA polymerase II IBA
 biological_processGO:0042796 snRNA transcription by RNA polymerase III IBA
 cellular_componentGO:0019185 snRNA-activating protein complex IBA
 molecular_functionGO:0043565 sequence-specific DNA binding IBA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain macrophage increased amount , abnormal
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 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
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 ZFA:0009141 macrophage macrophage increased amount , abnormal
macrophage morphology , abnormal
macrophage increased size , abnormal
macrophage lysosome increased size , abnormal
macrophage granuloma formation process quality , abnormal
macrophage myeloid leukocyte migration process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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