ENSDARG00000003961


Danio rerio

Features
Gene ID: ENSDARG00000003961
  
Biological name :parp3
  
Synonyms : parp3 / poly (ADP-ribose) polymerase family, member 3
  
Possible biological names infered from orthology : Q9Y6F1
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 42038358
Gene end: 42049350
  
Corresponding Affymetrix probe sets: Dr.15150.1.A1_at (Zebrafish Array)   NM_200501_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000026625
NCBI entrez gene - 335495     See in Manteia.
RefSeq - NM_200501
RefSeq Peptide - NP_956795
swissprot - F1QSK1
ZFIN ID - ZDB-GENE-030131-7435
Ensembl - ENSDARG00000003961
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PARP3ENSGALG00000004517Gallus gallus
 PARP3ENSG00000041880Homo sapiens
 Parp3ENSMUSG00000023249Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
parp2 / poly (ADP-ribose) polymerase 2 / O88554* / Q9UGN5*ENSDARG0000007920235
parp1 / poly (ADP-ribose) polymerase 1 / P09874* / poly (ADP-ribose) polymerase family, member 1*ENSDARG0000001952931


Protein motifs (from Interpro)
Interpro ID Name
 IPR004102  Poly(ADP-ribose) polymerase, regulatory domain
 IPR008893  WGR domain
 IPR012317  Poly(ADP-ribose) polymerase, catalytic domain
 IPR031275  Poly [ADP-ribose] polymerase 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006273 lagging strand elongation IBA
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006471 protein ADP-ribosylation IEA
 biological_processGO:0051103 DNA ligation involved in DNA repair IBA
 biological_processGO:0071696 ectodermal placode development IMP
 biological_processGO:0090299 regulation of neural crest formation IMP
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003910 DNA ligase (ATP) activity IBA
 molecular_functionGO:0003950 NAD+ ADP-ribosyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000040 median fin fold median fin fold structure , abnormal
median fin fold immature , abnormal
Show

 ZFA:0000217 inner ear inner ear aplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism dead , abnormal
Show

 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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