ENSDARG00000005699


Danio rerio

Features
Gene ID: ENSDARG00000005699
  
Biological name :ddx19
  
Synonyms : ddx19 / DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)
  
Possible biological names infered from orthology : AC012184.2 / ATP-dependent RNA helicase DDX19B isoform 3 / DDX19B / DEAD-box helicase 19B / Q9UMR2
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 3523358
Gene end: 3535581
  
Corresponding Affymetrix probe sets: Dr.10243.1.A1_at (Zebrafish Array)   Dr.19274.1.S1_at (Zebrafish Array)   Dr.19274.1.S2_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000134414
Ensembl peptide - ENSDARP00000003250
Ensembl peptide - ENSDARP00000137840
swissprot - A0A0R4IKV2
swissprot - A0A0R4IQ70
swissprot - F1QHT9
ZFIN ID - ZDB-GENE-020419-30
Ensembl - ENSDARG00000005699
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX19BENSGALG00000039967Gallus gallus
 AC012184.2ENSG00000260537Homo sapiens
 DDX19BENSG00000157349Homo sapiens
 Ddx19bENSMUSG00000033658Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:193690 / Q9UMR2* / DDX19B* / AC012184.2* / DEAD-box helicase 19B* / ATP-dependent RNA helicase DDX19B isoform 3 *ENSDARG0000004432577


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008380 RNA splicing IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism curved , abnormal
whole organism viability , abnormal
whole organism necrotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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