ENSDARG00000006672


Danio rerio

Features
Gene ID: ENSDARG00000006672
  
Biological name :fam49a
  
Synonyms : fam49a / family with sequence similarity 49, member A
  
Possible biological names infered from orthology : Protein FAM49A / Q8BHZ0 / Q9H0Q0
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 35255403
Gene end: 35298023
  
Corresponding Affymetrix probe sets: Dr.5216.1.S1_at (Zebrafish Array)   NM_200108_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000156770
Ensembl peptide - ENSDARP00000007418
Ensembl peptide - ENSDARP00000118942
Ensembl peptide - ENSDARP00000127400
Ensembl peptide - ENSDARP00000136153
NCBI entrez gene - 378872     See in Manteia.
RefSeq - NM_001324495
RefSeq - NM_001324493
RefSeq - NM_200108
RefSeq Peptide - NP_001311422
RefSeq Peptide - NP_001311424
RefSeq Peptide - NP_956402
swissprot - U3JAX9
swissprot - A0A0R4IMR9
swissprot - Q5TZ57
swissprot - Q7ZW35
ZFIN ID - ZDB-GENE-031002-50
Ensembl - ENSDARG00000006672
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FAM49AENSGALG00000016463Gallus gallus
 FAM49AENSG00000197872Homo sapiens
 Fam49aENSMUSG00000020589Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fam49al / family with sequence similarity 49, member A-likeENSDARG0000003590777
fam49bb / family with sequence similarity 49, member Bb / FAM49B* / Q921M7* / Q9NUQ9* / Protein FAM49B * / family with sequence similarity 49 member B*ENSDARG0000004541775
fam49ba / family with sequence similarity 49, member BaENSDARG0000002092973


Protein motifs (from Interpro)
Interpro ID Name
 IPR009828  Protein of unknown function DUF1394


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045580 regulation of T cell differentiation IMP
 biological_processGO:0048538 thymus development IMP
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001078 thymus thymus increased size , abnormal
thymus increased distribution , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr