ENSDARG00000007025


Danio rerio

Features
Gene ID: ENSDARG00000007025
  
Biological name :ttc9c
  
Synonyms : tetratricopeptide repeat domain 9C / ttc9c
  
Possible biological names infered from orthology : Q810A3 / Q8N5M4
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 45350008
Gene end: 45363735
  
Corresponding Affymetrix probe sets: Dr.10970.1.S1_at (Zebrafish Array)   NM_200265_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016595
NCBI entrez gene - 393235     See in Manteia.
RefSeq - NM_200265
RefSeq Peptide - NP_956559
swissprot - Q7ZUI3
ZFIN ID - ZDB-GENE-040426-1053
Ensembl - ENSDARG00000007025
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TTC9CENSG00000162222Homo sapiens
 Ttc9cENSMUSG00000071660Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ttc9b / tetratricopeptide repeat domain 9B / Q8N6N2* / Q9D6E4*ENSDARG0000006842132
TTC9 / si:ch211-259k16.3 / Q3V038* / Q92623* / tetratricopeptide repeat domain 9*ENSDARG0000007436328


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain
 IPR023566  Peptidyl-prolyl cis-trans isomerase, FKBP-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032474 otolith morphogenesis IMP
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0061371 determination of heart left/right asymmetry IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle cilium decreased length , abnormal
Kupffers vesicle cilium decreased amount , abnormal
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 ZFA:0000008 brain brain hydrocephalic , abnormal
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 ZFA:0000150 pronephric duct pronephric duct motile cilium disorganized , abnormal
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 ZFA:0001115 trunk trunk curved , abnormal
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 ZFA:0001261 ventricular system ventricular system dilated , abnormal
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 ZFA:0001617 otolith otolith morphology , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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