ENSDARG00000007892


Danio rerio

Features
Gene ID: ENSDARG00000007892
  
Biological name :pdcd2
  
Synonyms : pdcd2 / programmed cell death 2
  
Possible biological names infered from orthology : Q16342
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 24380132
Gene end: 24383805
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000017163
NCBI entrez gene - 393370     See in Manteia.
RefSeq - NM_001045138
RefSeq Peptide - NP_001038603
swissprot - Q1MTH6
ZFIN ID - ZDB-GENE-040426-1236
Ensembl - ENSDARG00000007892
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PDCD2ENSGALG00000011169Gallus gallus
 PDCD2ENSG00000071994Homo sapiens
 Pdcd2ENSMUSG00000014771Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pdcd2l / programmed cell death 2-like / Q8C5N5* / Q9BRP1* / AC092073.1* / Programmed cell death protein 2-like *ENSDARG0000000275422


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR007320  Programmed cell death protein 2, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007088 regulation of mitotic nuclear division IMP
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0060218 hematopoietic stem cell differentiation IMP
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000092 axis axis decreased length , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000155 somite somite deformed , abnormal
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 ZFA:0001058 caudal fin caudal fin curled , abnormal
caudal fin increased thickness , abnormal
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 ZFA:0001094 whole organism whole organism circulating cell lacks parts or has fewer parts of type blood cell , abnormal
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 ZFA:0001261 ventricular system ventricular system dilated , abnormal
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 ZFA:0001286 caudal vein plexus caudal vein plexus malformed , abnormal
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 ZFA:0005023 hematopoietic system hematopoietic system cell accumulation ball anterior region, abnormal
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 ZFA:0005025 dorsal longitudinal anastomotic vessel dorsal longitudinal anastomotic vessel malformed , abnormal
dorsal longitudinal anastomotic vessel broken , abnormal
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 ZFA:0005237 erythroblast erythroblast increased size , abnormal
erythroblast nucleus increased size , abnormal
erythroblast increased amount , abnormal
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 ZFA:0005314 blood vessel blood vessel blood lacks parts or has fewer parts of type nucleate erythrocyte , abnormal
blood vessel has fewer parts of type blood cell , abnormal
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 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell absent , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte accumulation intermediate cell mass of mesoderm , abnormal
nucleate erythrocyte immature , abnormal
nucleate erythrocyte accumulation common cardinal vein , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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