ENSDARG00000008032


Danio rerio

Features
Gene ID: ENSDARG00000008032
  
Biological name :sart3
  
Synonyms : B3DJT0 / sart3 / squamous cell carcinoma antigen recognized by T cells 3
  
Possible biological names infered from orthology : Mus musculus squamous cell carcinoma antigen recognized by T cells 3 (Sart3), transcript variant 3, mRNA. / Q15020 / Q9JLI8
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 20453874
Gene end: 20481389
  
Corresponding Affymetrix probe sets: Dr.21754.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000004923
Ensembl peptide - ENSDARP00000106223
NCBI entrez gene - 558581     See in Manteia.
RefSeq - XM_005165154
RefSeq - XM_017356104
RefSeq - NM_001030118
RefSeq Peptide - NP_001025289
swissprot - Q6ZM52
swissprot - B3DJT0
ZFIN ID - ZDB-GENE-040724-10
Ensembl - ENSDARG00000008032
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SART3ENSGALG00000039472Gallus gallus
 SART3ENSG00000075856Homo sapiens
 Sart3ENSMUSG00000018974Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR034217  SART3, RNA recognition motif 1
 IPR034218  SART3, RNA recognition motif 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IMP
 biological_processGO:0000387 spliceosomal snRNP assembly IMP
 biological_processGO:0000398 mRNA splicing, via spliceosome ISS
 biological_processGO:0006334 nucleosome assembly ISS
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0030098 lymphocyte differentiation IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0048538 thymus development IMP
 biological_processGO:1903586 positive regulation of histone deubiquitination ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005691 U6atac snRNP ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0015030 Cajal body ISS
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071001 U4/U6 snRNP ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0017070 U6 snRNA binding ISS
 molecular_functionGO:0042393 histone binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001078 thymus thymus epithelial cell decreased thickness , abnormal
thymus T cell absent , abnormal
Show

 ZFA:0001094 whole organism whole organism edematous , abnormal
whole organism dead , abnormal
whole organism U6 snRNP decreased amount , abnormal
whole organism lethal (sensu genetics) , abnormal
Show

 ZFA:0001114 head head decreased circumference , abnormal
Show

 ZFA:0001216 splanchnocranium splanchnocranium malformed , abnormal
Show

 ZFA:0001249 exocrine pancreas exocrine pancreas decreased size , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch malformed , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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