ENSDARG00000009871


Danio rerio

Features
Gene ID: ENSDARG00000009871
  
Biological name :snrpc
  
Synonyms : Q8JGS0 / small nuclear ribonucleoprotein polypeptide C / snrpc
  
Possible biological names infered from orthology : P09234 / Q62241 / U1 small nuclear ribonucleoprotein C
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 54430413
Gene end: 54433995
  
Corresponding Affymetrix probe sets: Dr.18318.1.S1_at (Zebrafish Array)   NM_173251_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010253
NCBI entrez gene - 192330     See in Manteia.
RefSeq - NM_173251
RefSeq Peptide - NP_775358
swissprot - B2GSI1
swissprot - Q8JGS0
ZFIN ID - ZDB-GENE-020419-26
Ensembl - ENSDARG00000009871
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPCENSGALG00000002773Gallus gallus
 SNRPCENSG00000124562Homo sapiens
 SnrpcENSMUSG00000024217Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000690  Matrin/U1-C, C2H2-type zinc finger
 IPR003604  Matrin/U1-C-like, C2H2-type zinc finger
 IPR013085  U1-C, C2H2-type zinc finger
 IPR013087  Zinc finger C2H2-type
 IPR017340  U1 small nuclear ribonucleoprotein C


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IMP
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0000395 mRNA 5"-splice site recognition IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0000243 commitment complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005685 U1 snRNP ISS
 cellular_componentGO:0071004 U2-type prespliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0030619 U1 snRNA binding IEA
 molecular_functionGO:0030627 pre-mRNA 5"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
eye necrotic , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
whole organism circling , abnormal
whole organism decreased pigmentation , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head necrotic , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk bent , abnormal
trunk necrotic , abnormal
trunk curved dorsal , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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