ENSDARG00000011648


Danio rerio

Features
Gene ID: ENSDARG00000011648
  
Biological name :snrpd1
  
Synonyms : small nuclear ribonucleoprotein D1 polypeptide / snrpd1
  
Possible biological names infered from orthology : P62314 / P62315 / Small nuclear ribonucleoprotein Sm D1
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 1872794
Gene end: 1877746
  
Corresponding Affymetrix probe sets: Dr.10241.1.S1_at (Zebrafish Array)   NM_173252_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000120135
Ensembl peptide - ENSDARP00000027770
NCBI entrez gene - 192331     See in Manteia.
RefSeq - NM_173252
RefSeq Peptide - NP_775359
swissprot - B8JKY9
swissprot - Q8JHH1
ZFIN ID - ZDB-GENE-020419-14
Ensembl - ENSDARG00000011648
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRPD1ENSGALG00000041334Gallus gallus
 P62314ENSG00000167088Homo sapiens
 P62315ENSMUSG00000002477Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001163  LSM domain, eukaryotic/archaea-type
 IPR010920  LSM domain superfamily
 IPR027141  Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
 IPR034102  Small nuclear ribonucleoprotein D1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0007507 heart development IMP
 cellular_componentGO:0000243 commitment complex IBA
 cellular_componentGO:0005682 U5 snRNP IBA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005686 U2 snRNP IBA
 cellular_componentGO:0005687 U4 snRNP IBA
 cellular_componentGO:0005689 U12-type spliceosomal complex IBA
 cellular_componentGO:0034715 pICln-Sm protein complex IBA
 cellular_componentGO:0034719 SMN-Sm protein complex IBA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0097526 spliceosomal tri-snRNP complex IBA
 molecular_functionGO:0003723 RNA binding IBA


Pathways (from Reactome)
Pathway description
snRNP Assembly
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000084 yolk yolk circular , abnormal
Show

 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
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 ZFA:0000114 heart heart necrotic , abnormal
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 ZFA:0000396 nervous system nervous system quality , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
Show

 ZFA:0001115 trunk trunk necrotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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