ENSDARG00000011925


Danio rerio

Features
Gene ID: ENSDARG00000011925
  
Biological name :spns1
  
Synonyms : spinster homolog 1 (Drosophila) / spns1
  
Possible biological names infered from orthology : 1 / Q8R0G7 / Q9H2V7 / sphingolipid transporter 1 (putative)
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 15455319
Gene end: 15475080
  
Corresponding Affymetrix probe sets: Dr.6504.1.S1_at (Zebrafish Array)   NM_153663_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000122340
Ensembl peptide - ENSDARP00000009970
Ensembl peptide - ENSDARP00000151373
NCBI entrez gene - 799873     See in Manteia.
RefSeq - NM_153663
RefSeq - XM_005163832
RefSeq Peptide - NP_705949
swissprot - G1K2F4
swissprot - E9QH48
ZFIN ID - ZDB-GENE-020228-1
Ensembl - ENSDARG00000011925
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SPNS1ENSG00000169682Homo sapiens
 1 ENSMUSG00000030741Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
spns3 / A2CER7 / spinster homolog 3 (Drosophila) / 3 * / Q9D232* / Q6ZMD2* / sphingolipid transporter 3 (putative)*ENSDARG0000003545952


Protein motifs (from Interpro)
Interpro ID Name
 IPR011701  Major facilitator superfamily
 IPR020846  Major facilitator superfamily domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000084 yolk yolk opaque , abnormal
yolk necrotic , abnormal
yolk dark grey , abnormal
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 ZFA:0000106 extension extension absent , abnormal
extension decreased thickness , abnormal
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 ZFA:0000123 liver liver composition , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism decreased life span , abnormal
whole organism necrotic , abnormal
whole organism edematous , abnormal
whole organism lethal (sensu genetics) , abnormal
whole organism quality , abnormal
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 ZFA:0001115 trunk trunk decreased thickness , abnormal
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 ZFA:0005145 muscle muscle composition , abnormal
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 ZFA:0009000 cell cell autophagosome accumulation cell perinuclear region of cytoplasm, abnormal
cell autolysosome accumulation cell perinuclear region of cytoplasm, abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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