ENSDARG00000012113


Danio rerio

Features
Gene ID: ENSDARG00000012113
  
Biological name :c19h1orf109
  
Synonyms : c19h1orf109 / c19h1orf109 homolog (H. sapiens)
  
Possible biological names infered from orthology : 9930104L06Rik / C1orf109 / chromosome 1 open reading frame 109 / Mus musculus RIKEN cDNA 9930104L06 (9930104L06Rik), transcript variant 2, mRNA. / Q499E6 / Q9NX04
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 47783137
Gene end: 47787275
  
Corresponding Affymetrix probe sets: Dr.17482.1.S1_at (Zebrafish Array)   NM_173269_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000025246
Ensembl peptide - ENSDARP00000135975
NCBI entrez gene - 286778     See in Manteia.
RefSeq - NM_173269
RefSeq Peptide - NP_775376
swissprot - F1R3X4
swissprot - A0A0R4INT1
ZFIN ID - ZDB-GENE-021219-1
Ensembl - ENSDARG00000012113
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 C1orf109ENSGALG00000045165Gallus gallus
 Q9NX04ENSG00000116922Homo sapiens
 Q499E6ENSMUSG00000044730Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029159  Casein Kinase 2 substrate


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000095 pharyngeal arch 3-7 skeleton pharyngeal arch 3-7 skeleton quality , abnormal
pharyngeal arch 3-7 skeleton decreased size , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001114 head head circular , abnormal
head decreased size , abnormal
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 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage bent , abnormal
ceratohyal cartilage mislocalised posteriorly , abnormal
Show

 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 decreased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr