ENSDARG00000012141


Danio rerio

Features
Gene ID: ENSDARG00000012141
  
Biological name :papolg
  
Synonyms : papolg / poly(A) polymerase gamma
  
Possible biological names infered from orthology : Q6PCL9 / Q9BWT3
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 25824345
Gene end: 25842074
  
Corresponding Affymetrix probe sets: Dr.12517.1.A1_at (Zebrafish Array)   NM_200621_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000015948
NCBI entrez gene - 393593     See in Manteia.
RefSeq - XM_005156791
RefSeq - XM_005156792
RefSeq - NM_200621
RefSeq Peptide - NP_956915
swissprot - A2BGL0
ZFIN ID - ZDB-GENE-040426-1256
Ensembl - ENSDARG00000012141
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAPOLGENSGALG00000007853Gallus gallus
 PAPOLGENSG00000115421Homo sapiens
 PapolgENSMUSG00000020273Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
papola / poly(A) polymerase alpha / PAPOLB* / P51003* / Q61183* / Q9NRJ5* / poly(A) polymerase beta*ENSDARG0000000958555


Protein motifs (from Interpro)
Interpro ID Name
 IPR002934  Polymerase, nucleotidyl transferase domain
 IPR007010  Poly(A) polymerase, RNA-binding domain
 IPR007012  Poly(A) polymerase, central domain
 IPR011068  Nucleotidyltransferase, class I-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0031123 RNA 3"-end processing IEA
 biological_processGO:0043631 RNA polyadenylation IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004652 polynucleotide adenylyltransferase activity IBA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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