ENSDARG00000012499


Danio rerio

Features
Gene ID: ENSDARG00000012499
  
Biological name :per1b
  
Synonyms : per1b / period circadian clock 1b
  
Possible biological names infered from orthology : O15534 / O35973 / PER1 / Period circadian protein homolog 1 / period circadian regulator 1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 50822465
Gene end: 50847296
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000155485
Ensembl peptide - ENSDARP00000007258
NCBI entrez gene - 406204     See in Manteia.
RefSeq - NM_212439
RefSeq Peptide - NP_997604
swissprot - B3DK47
ZFIN ID - ZDB-GENE-040419-1
Ensembl - ENSDARG00000012499
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PER1ENSG00000179094Homo sapiens
 Per1ENSMUSG00000020893Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
per1a / period circadian clock 1a / PER1* / O35973* / O15534* / period circadian regulator 1* / Period circadian protein homolog 1 *ENSDARG0000005688556
per2 / period circadian clock 2 / O15055* / period circadian regulator 2*ENSDARG0000003450342
per3 / period circadian clock 3 / P56645* / O70361* / period circadian regulator 3* / Period circadian protein homolog 3 *ENSDARG0000001051934


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR013655  PAS fold-3
 IPR022728  Period circadian-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009266 response to temperature stimulus IDA
 biological_processGO:0009416 response to light stimulus IEP
 biological_processGO:0042752 regulation of circadian rhythm IMP
 biological_processGO:0071542 dopaminergic neuron differentiation IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure increased amount , abnormal
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 ZFA:0000119 retinal inner nuclear layer retinal inner nuclear layer has fewer parts of type dopaminergic neuron , abnormal
retinal inner nuclear layer has fewer parts of type dopaminergic neuron , ameliorated
retinal inner nuclear layer dopaminergic neuron decreased distribution , abnormal
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 ZFA:0000152 retina retina dopamine decreased amount , abnormal
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 ZFA:0000633 caudal tuberculum caudal tuberculum has fewer parts of type dopaminergic neuron , abnormal
caudal tuberculum dopaminergic neuron disorganized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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