ENSDARG00000012776


Danio rerio

Features
Gene ID: ENSDARG00000012776
  
Biological name :smarca1
  
Synonyms : smarca1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
  
Possible biological names infered from orthology : Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (Smarca1), transcript variant 3, mRNA. / P28370 / Q6PGB8
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 21852714
Gene end: 21888368
  
Corresponding Affymetrix probe sets: Dr.12723.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000023313
NCBI entrez gene - 559803     See in Manteia.
swissprot - A5WUY4
ZFIN ID - ZDB-GENE-070705-296
Ensembl - ENSDARG00000012776
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMARCA1ENSGALG00000008431Gallus gallus
 P28370ENSG00000102038Homo sapiens
 Q6PGB8ENSMUSG00000031099Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smarca5 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5ENSDARG0000005234880
chd1l / chromodomain helicase DNA binding protein 1-like / Q86WJ1* / Q9CXF7*ENSDARG0000001547126


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001005  SANT/Myb domain
 IPR001650  Helicase, C-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR015194  ISWI, HAND domain
 IPR015195  SLIDE domain
 IPR017884  SANT domain
 IPR020838  DBINO domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0021999 neural plate anterior/posterior regionalization IGI
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0060215 primitive hemopoiesis IMP
 biological_processGO:0060319 primitive erythrocyte differentiation IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016589 NURF complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0031491 nucleosome binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000041 mesoderm mesoderm decreased amount , abnormal
Show

 ZFA:0009015 erythroid progenitor cell erythroid progenitor cell decreased amount , abnormal
Show

 ZFA:0009325 erythroid lineage cell erythroid lineage cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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