ENSDARG00000012892


Danio rerio

Features
Gene ID: ENSDARG00000012892
  
Biological name :ammecr1
  
Synonyms : Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 homolog (human) / ammecr1
  
Possible biological names infered from orthology : Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 / AMME syndrome candidate 1 protein homolog / Q9JHT5 / Q9Y4X0
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 44709280
Gene end: 44731865
  
Corresponding Affymetrix probe sets: Dr.19468.1.A1_at (Zebrafish Array)   NM_200581_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000006365
NCBI entrez gene - 393553     See in Manteia.
RefSeq - NM_200581
RefSeq Peptide - NP_956875
swissprot - Q6NWA1
ZFIN ID - ZDB-GENE-040426-1533
Ensembl - ENSDARG00000012892
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AMMECR1ENSGALG00000008074Gallus gallus
 Q9Y4X0ENSG00000101935Homo sapiens
 Q9JHT5ENSMUSG00000042225Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002733  AMMECR1 domain
 IPR023473  AMMECR1
 IPR027485  AMMECR1, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
whole organism decreased thickness , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
post-vent region kinked , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2025
contact: otassy@igbmc.fr