ENSDARG00000013134


Danio rerio

Features
Gene ID: ENSDARG00000013134
  
Biological name :zmp:0000000545
  
Synonyms : zmp:0000000545
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 39873584
Gene end: 39886628
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000003339
Ensembl peptide - ENSDARP00000146956
NCBI entrez gene - 100331800     See in Manteia.
swissprot - E7F4U2
ZFIN ID - ZDB-GENE-130530-548
Ensembl - ENSDARG00000013134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ROM1ENSGALG00000009185Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prph2l / peripherin 2, likeENSDARG0000002134571
prph2a / peripherin 2a (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000003801849
prph2b / peripherin 2b (retinal degeneration, slow) / PRPH2* / P15499* / P23942* / peripherin 2*ENSDARG0000001484048
rom1a / retinal outer segment membrane protein 1a / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000001975246
rom1b / retinal outer segment membrane protein 1b / ROM1* / Q03395* / P32958* / Rod outer segment membrane protein 1 * / retinal outer segment membrane protein 1*ENSDARG0000002692646


Protein motifs (from Interpro)
Interpro ID Name
 IPR000830  Peripherin/rom-1
 IPR008952  Tetraspanin, EC2 domain superfamily
 IPR018499  Tetraspanin/Peripherin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007166 cell surface receptor signaling pathway IBA
 biological_processGO:0007601 visual perception IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr