ENSDARG00000013472


Danio rerio

Features
Gene ID: ENSDARG00000013472
  
Biological name :nedd1
  
Synonyms : nedd1 / neural precursor cell expressed, developmentally down-regulated 1
  
Possible biological names infered from orthology : P33215 / Protein NEDD1 / Q8NHV4
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 19541019
Gene end: 19556986
  
Corresponding Affymetrix probe sets: Dr.5493.1.A1_at (Zebrafish Array)   NM_213506_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016280
Ensembl peptide - ENSDARP00000117911
NCBI entrez gene - 406827     See in Manteia.
RefSeq - XM_005163004
RefSeq - NM_213506
RefSeq Peptide - NP_998671
swissprot - F1QAL1
swissprot - E9QDJ2
ZFIN ID - ZDB-GENE-040426-2906
Ensembl - ENSDARG00000013472
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NEDD1ENSGALG00000031699Gallus gallus
 NEDD1ENSG00000139350Homo sapiens
 Nedd1ENSMUSG00000019988Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR024977  Anaphase-promoting complex subunit 4, WD40 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0071539 protein localization to centrosome IMP
 cellular_componentGO:0000242 pericentriolar material IBA
 cellular_componentGO:0000922 spindle pole IBA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IBA
 cellular_componentGO:0036064 ciliary basal body IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Regulation of PLK1 Activity at G2/M Transition
Loss of Nlp from mitotic centrosomes
Recruitment of mitotic centrosome proteins and complexes
Loss of proteins required for interphase microtubule organization from the centrosome
Recruitment of NuMA to mitotic centrosomes
Anchoring of the basal body to the plasma membrane
AURKA Activation by TPX2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000013 cranial ganglion cranial ganglion irregular spatial pattern , abnormal
Show

 ZFA:0000075 spinal cord spinal cord apoptotic , abnormal
Show

 ZFA:0000109 forebrain forebrain apoptotic , abnormal
Show

 ZFA:0001094 whole organism whole organism apoptotic , abnormal
whole organism increased curvature , abnormal
Show

 ZFA:0001117 post-vent region post-vent region decreased length , abnormal
Show

 ZFA:0009150 Rohon-Beard neuron Rohon-Beard neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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