ENSDARG00000013860


Danio rerio

Features
Gene ID: ENSDARG00000013860
  
Biological name :ptpmt1
  
Synonyms : protein tyrosine phosphatase, mitochondrial 1 / ptpmt1
  
Possible biological names infered from orthology : Q8WUK0
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 38577869
Gene end: 38582618
  
Corresponding Affymetrix probe sets: Dr.15014.1.A1_at (Zebrafish Array)   Dr.15014.2.S1_at (Zebrafish Array)   NM_001080187_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000068947
Ensembl peptide - ENSDARP00000119173
NCBI entrez gene - 567019     See in Manteia.
RefSeq - NM_001080187
RefSeq Peptide - NP_001073656
swissprot - E9QBA4
swissprot - A1L293
ZFIN ID - ZDB-GENE-070112-272
Ensembl - ENSDARG00000013860
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTPMT1ENSGALG00000008091Gallus gallus
 PTPMT1ENSG00000110536Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR016130  Protein-tyrosine phosphatase, active site
 IPR020422  Dual specificity protein phosphatase domain
 IPR024950  Dual specificity phosphatase
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IBA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism decreased life span , abnormal
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 ZFA:0005277 skeletal muscle skeletal muscle morphology , abnormal
skeletal muscle disorganized , abnormal
skeletal muscle mitochondrion morphology , abnormal
skeletal muscle mitochondrial intermembrane space increased size , abnormal
skeletal muscle mitochondrial matrix composition , abnormal
skeletal muscle mitochondrial matrix accumulation skeletal muscle vesicle, abnormal
skeletal muscle mitochondrial crista morphology , abnormal
skeletal muscle mitochondrial membrane broken , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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