ENSDARG00000014626


Danio rerio

Features
Gene ID: ENSDARG00000014626
  
Biological name :dlx3b
  
Synonyms : distal-less homeobox 3b / dlx3b
  
Possible biological names infered from orthology : distal-less homeobox 3 / DLX3 / Homeobox protein DLX-3 / O60479 / Q64205
  
Species: Danio rerio
  
Chr. number: 12
Strand: 1
Band:
Gene start: 5708400
Gene end: 5711920
  
Corresponding Affymetrix probe sets: Dr.5788.1.S1_at (Zebrafish Array)   NM_131322_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000022291
NCBI entrez gene - 30585     See in Manteia.
RefSeq - NM_131322
RefSeq Peptide - NP_571397
swissprot - Q6DBS2
ZFIN ID - ZDB-GENE-980526-280
Ensembl - ENSDARG00000014626
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DLX3ENSGALG00000040529Gallus gallus
 DLX3ENSG00000064195Homo sapiens
 Dlx3ENSMUSG00000001510Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dlx5a / distal-less homeobox 5a / DLX5* / P70396* / P56178* / distal-less homeobox 5* / Homeobox protein DLX-5 *ENSDARG0000004229655
dlx2a / distal-less homeobox 2a / DLX2* / Q07687* / distal-less homeobox 2*ENSDARG0000007996447
dlx2b / Q98876 / distal-less homeobox 2bENSDARG0000001717445
dlx6a / Q98877 / distal-less homeobox 6a / DLX6* / P56179* / P70397* / distal-less homeobox 6* / Homeobox protein DLX-6 *ENSDARG0000004229134
dlx1a / Q98875 / distal-less homeobox 1a / DLX1* / P56177* / distal-less homeobox 1*ENSDARG0000001312533
dlx4b / Q98878 / distal-less homeobox 4b / DLX4* / P70436* / Q92988* / distal-less homeobox 4* / Homeobox protein DLX-4 *ENSDARG0000007156032
dlx4a / Q98879 / distal-less homeobox 4a / DLX4* / P70436* / Q92988* / distal-less homeobox 4* / Homeobox protein DLX-4 *ENSDARG0000001195631
msx2a / muscle segment homeobox 2aENSDARG0000010465121
msx1a / muscle segment homeobox 1a / MSX1* / P28360* / msh homeobox 1*ENSDARG0000011611821
msx1b / Q03356 / muscle segment homeobox 1b / Msx3* / P70354* / Mus musculus msh homeobox 3 (Msx3), transcript variant 2, mRNA.*ENSDARG0000000888620
msx3 / muscle segment homeobox 3 / P70354* / Mus musculus msh homeobox 3 (Msx3), transcript variant 2, mRNA.*ENSDARG0000001567419
msx2b / Q01704 / muscle segment homeobox 2b / MSX2* / P35548* / msh homeobox 2*ENSDARG0000010102319


Protein motifs (from Interpro)
Interpro ID Name
 IPR000047  Helix-turn-helix motif
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa
 IPR022135  Distal-less-like homeobox protein, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000051 otic vesicle otic vesicle aplastic , abnormal
otic vesicle hypoplastic , abnormal
otic vesicle decreased size , abnormal
otic vesicle lacks all parts of type otolith , abnormal
otic vesicle lacks all parts of type hair cell , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton joint absent , abnormal
Show

 ZFA:0001617 otolith otolith decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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