ENSDARG00000015072


Danio rerio

Features
Gene ID: ENSDARG00000015072
  
Biological name :dmrt2a
  
Synonyms : dmrt2a / doublesex and mab-3 related transcription factor 2a
  
Possible biological names infered from orthology : DMRT2 / doublesex and mab-3 related transcription factor 2 / Q8BG36 / Q9Y5R5
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 45007962
Gene end: 45013409
  
Corresponding Affymetrix probe sets: Dr.8088.1.S1_at (Zebrafish Array)   NM_130952_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000002460
Ensembl peptide - ENSDARP00000155386
NCBI entrez gene - 30129     See in Manteia.
RefSeq - NM_130952
RefSeq Peptide - NP_571027
swissprot - Q9W7K3
ZFIN ID - ZDB-GENE-990621-7
Ensembl - ENSDARG00000015072
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DMRT2ENSGALG00000026790Gallus gallus
 DMRT2ENSG00000173253Homo sapiens
 Dmrt2ENSMUSG00000048138Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dmrt2b / doublesex and mab-3 related transcription factor 2b / Q5HYR2* / DMRTC1* / Q9D9R7* / Q8IXT2* / Q8CGW9* / DMRTC2* / DMRTC1B* / Dmrtc1a* / DMRT like family C2* / DMRT like family C1* ...ENSDARG0000007001326
dmrta2 / DMRT-like family A2 / A2A9A2* / Q96SC8* / Doublesex- and mab-3-related transcription factor A2 *ENSDARG0000003941219
dmrt3a / P83758 / doublesex and mab-3 related transcription factor 3a / DMRT3* / Q80WT2* / Q9NQL9* / doublesex and mab-3 related transcription factor 3*ENSDARG0000003529016
dmrt1 / Q71MM5 / doublesex and mab-3 related transcription factor 1 / Q9QZ59* / Q9Y5R6*ENSDARG0000000734914


Protein motifs (from Interpro)
Interpro ID Name
 IPR001275  DM DNA-binding domain
 IPR026607  DMRT/protein doublesex/protein male abnormal 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006915 apoptotic process IDA
 biological_processGO:0007368 determination of left/right symmetry IMP
 cellular_componentGO:0005634 nucleus IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm asymmetrical , abnormal
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 ZFA:0000155 somite somite asymmetrical , abnormal
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 ZFA:0001094 whole organism whole organism increased amount , abnormal
whole organism decreased amount , abnormal
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 ZFA:0001115 trunk trunk decreased length , abnormal
trunk curved ventral , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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