ENSDARG00000015208


Danio rerio

Features
Gene ID: ENSDARG00000015208
  
Biological name :rbb4l
  
Synonyms : rbb4l / retinoblastoma binding protein 4, like
  
Possible biological names infered from orthology : Q16576 / Q60973 / RB binding protein 7, chromatin remodeling factor / RBBP7 / retinoblastoma binding protein 7, chromatin remodeling factor
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 12744575
Gene end: 12770546
  
Corresponding Affymetrix probe sets: Dr.1119.1.S1_at (Zebrafish Array)   NM_212610_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000108096
Ensembl peptide - ENSDARP00000117542
Ensembl peptide - ENSDARP00000075778
NCBI entrez gene - 322129     See in Manteia.
RefSeq - NM_212610
RefSeq Peptide - NP_997775
swissprot - E9QC86
swissprot - F1QT75
ZFIN ID - ZDB-GENE-030131-848
Ensembl - ENSDARG00000015208
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBBP7ENSGALG00000016546Gallus gallus
 RBBP7ENSG00000102054Homo sapiens
 Rbbp7ENSMUSG00000031353Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbbp4 / retinoblastoma binding protein 4 / Q60972* / Q09028* / Histone-binding protein RBBP4 * / RB binding protein 4, chromatin remodeling factor*ENSDARG0000002905893


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR022052  Histone-binding protein RBBP4, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
HATs acetylate histones
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription
Neddylation
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001269 regenerating fin regenerating fin caudal fin actinotrichium disorganized , abnormal
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 ZFA:0001270 blastema blastema cell proliferation decreased occurrence , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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