ENSDARG00000016630


Danio rerio

Features
Gene ID: ENSDARG00000016630
  
Biological name :tprb
  
Synonyms : tprb / translocated promoter region b, nuclear basket protein
  
Possible biological names infered from orthology : F6ZDS4 / P12270 / TPR / translocated promoter region, nuclear basket protein
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 34039281
Gene end: 34069956
  
Corresponding Affymetrix probe sets: Dr.2655.2.A1_at (Zebrafish Array)   NM_001030123_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000019846
NCBI entrez gene - 558883     See in Manteia.
RefSeq - XM_009294751
RefSeq - NM_001030123
RefSeq Peptide - NP_001025294
swissprot - Q5RI09
ZFIN ID - ZDB-GENE-030131-6410
Ensembl - ENSDARG00000016630
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TPRENSGALG00000005105Gallus gallus
 TPRENSG00000047410Homo sapiens
 TprENSMUSG00000006005Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tpra / translocated promoter region a, nuclear basket protein / TPR* / P12270* / F6ZDS4* / translocated promoter region, nuclear basket protein*ENSDARG0000010300456


Protein motifs (from Interpro)
Interpro ID Name
 IPR012929  Nucleoprotein TPR/MLP1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IEA
 biological_processGO:0006913 nucleocytoplasmic transport IBA
 biological_processGO:0007094 mitotic spindle assembly checkpoint IBA
 cellular_componentGO:0005643 nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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