ENSDARG00000016830


Danio rerio
atp-graspfoldbindingligaseactivityrimklamodificationenzymeribosomalsrimklysinebiosynthesislysxrimk-typesubdomaincellularproteinprocesscytoplasmnucleotideatpmetalionn-acetyl-l-aspartate-l-glutamatecitrate-l-glutamateaminoacidsynthesisinterconversiontransamination

Features
Gene ID: ENSDARG00000016830
  
Biological name :rimkla
  
Synonyms : Q66HZ2 / ribosomal modification protein rimK-like family member A / rimkla
  
Possible biological names infered from orthology : N-acetylaspartylglutamate synthase A / Q6PFX8 / Q8IXN7
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 26868105
Gene end: 26887308
  
Corresponding Affymetrix probe sets: Dr.20131.7.A1_at (Zebrafish Array)   Dr.20131.8.S1_at (Zebrafish Array)   Dr.26384.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000114117
Ensembl peptide - ENSDARP00000115365
Ensembl peptide - ENSDARP00000007712
NCBI entrez gene - 447815     See in Manteia.
RefSeq - NM_001004554
RefSeq Peptide - NP_001004554
swissprot - F1QZ76
swissprot - F1Q7A0
swissprot - Q66HZ2
ZFIN ID - ZDB-GENE-040912-20
Ensembl - ENSDARG00000016830
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8IXN7ENSG00000177181Homo sapiens
 Q6PFX8ENSMUSG00000048899Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004666  Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX
 IPR011761  ATP-grasp fold
 IPR013651  ATP-grasp fold, RimK-type
 IPR013815  ATP-grasp fold, subdomain 1


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processnitrogen compound metabolic processnitrogen compound metabolic processcellular metabolic processcellular metabolic processprimary metabolic processprimary metabolic processorganic substance metabolic processorganic substance metabolic process
organic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compound bindingheterocyclic compound bindingsmall molecule bindingion bindingcarbohydrate derivative bindingdrug bindingligase activityorganic cyclic compoorganic cyclic compound bindingheterocyclic compounheterocyclic compound bindingsmall molecule bindismall molecule bindingion bindingion bindingcarbohydrate derivatcarbohydrate derivative bindingdrug bindingdrug bindingligase activityligase activity
cellcellcellcellcellcellcellcellcellcellcellcell
TypeGO IDTermEv.Code
 biological_processGO:0006464 cellular protein modification process IEA
 cellular_componentGO:0005737 cytoplasm ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0072590 N-acetyl-L-aspartate-L-glutamate ligase activity IBA
 molecular_functionGO:0072591 citrate-L-glutamate ligase activity ISS


Pathways (from Reactome)
Pathway description
Amino acid synthesis and interconversion (transamination)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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