ENSDARG00000017315


Danio rerio

Features
Gene ID: ENSDARG00000017315
  
Biological name :larp7
  
Synonyms : La ribonucleoprotein domain family, member 7 / larp7
  
Possible biological names infered from orthology : Gm12666 / La-related protein 7 / Q05CL8 / Q4G0J3
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 59572379
Gene end: 59589566
  
Corresponding Affymetrix probe sets: Dr.23632.1.A1_at (Zebrafish Array)   Dr.24326.1.S1_at (Zebrafish Array)   NM_199930_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000013520
Ensembl peptide - ENSDARP00000092507
NCBI entrez gene - 334956     See in Manteia.
RefSeq - NM_199930
RefSeq Peptide - NP_956224
swissprot - F1R347
swissprot - E7F7F2
ZFIN ID - ZDB-GENE-030131-6896
Ensembl - ENSDARG00000017315
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LARP7ENSGALG00000012048Gallus gallus
 LARP7ENSG00000174720Homo sapiens
 Gm12666ENSMUSG00000066107Mus musculus
 Larp7ENSMUSG00000027968Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
larp6a / La ribonucleoprotein domain family, member 6a / LARP6* / Q8BN59* / Q9BRS8* / La-related protein 6 * / La ribonucleoprotein domain family member 6*ENSDARG0000000535514
larp6b / La ribonucleoprotein domain family, member 6bENSDARG0000000396813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR002344  Lupus La protein
 IPR006630  La-type HTH domain
 IPR011991  ArsR-like helix-turn-helix domain
 IPR014886  La protein, RNA-binding domain
 IPR034887  LARP7, RNA recognition motif 1
 IPR034910  LARP7, RNA recognition motif 2
 IPR034946  La-related protein 7, La domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain degenerate , abnormal
Show

 ZFA:0000009 cardiac ventricle cardiac ventricle cardiac muscle cell increased amount , abnormal
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 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
anatomical structure increased amount , abnormal
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 ZFA:0000045 neural crest neural crest amount , ameliorated
Show

 ZFA:0000114 heart heart morphology , ameliorated
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 ZFA:0000471 atrium atrium dilated , abnormal
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 ZFA:0001094 whole organism whole organism morphology , ameliorated
Show

 ZFA:0001269 regenerating fin regenerating fin neutrophil amount , ameliorated
regenerating fin neutrophil increased amount , abnormal
Show

 ZFA:0009091 melanocyte melanocyte amount , ameliorated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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