ENSDARG00000017798


Danio rerio

Features
Gene ID: ENSDARG00000017798
  
Biological name :bcor
  
Synonyms : BCL6 corepressor / bcor
  
Possible biological names infered from orthology : Q6W2J9 / Q8CGN4
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 11144153
Gene end: 11200846
  
Corresponding Affymetrix probe sets: Dr.16163.1.S1_at (Zebrafish Array)   NM_205626_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000047441
Ensembl peptide - ENSDARP00000092882
Ensembl peptide - ENSDARP00000145135
NCBI entrez gene - 402921     See in Manteia.
RefSeq - NM_205626
RefSeq - XM_005173943
RefSeq Peptide - NP_991189
swissprot - Q6W2J8
swissprot - F1RCL8
ZFIN ID - ZDB-GENE-040408-1
Ensembl - ENSDARG00000017798
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000043274Gallus gallus
 BCORENSGALG00000016245Gallus gallus
 BCORENSG00000183337Homo sapiens
 BcorENSMUSG00000040363Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
bcorl1 / BCL6 corepressor-like 1 / A2AQH4* / Q5H9F3* / BCL-6 corepressor-like protein 1 *ENSDARG0000007791217
tonsl / tonsoku-like, DNA repair protein / Q96HA7*ENSDARG000000712947
ankrd11 / ankyrin repeat domain 11 / Q6UB99*ENSDARG000000518866
ankrd12 / ankyrin repeat domain 12 / Q6UB98*ENSDARG000000524195
slf1 / SMC5-SMC6 complex localization factor 1 / Q8R3P9* / Q9BQI6*ENSDARG000001021185
bard1 / BRCA1 associated RING domain 1 / O70445* / Q99728* / BRCA1-associated RING domain protein 1 *ENSDARG000000767334
ankrd31 / ankyrin repeat domain 31 / Q8N7Z5*ENSDARG000000527311


Protein motifs (from Interpro)
Interpro ID Name
 IPR002110  Ankyrin repeat
 IPR020683  Ankyrin repeat-containing domain
 IPR031628  BCL-6 corepressor, non-ankyrin-repeat domain
 IPR032365  BCL-6 corepressor, PCGF1 binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021915 neural tube development IMP
 biological_processGO:0043010 camera-type eye development IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator IMP


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000109 forebrain forebrain retinal pigmented epithelium mislocalized adaxially , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0000152 retina retina perforate , abnormal
retina ventral region mislocalized adaxially , abnormal
retina intrinsic apoptotic signaling pathway by p53 class mediator increased occurrence , abnormal
retina cell apoptotic , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin absent , abnormal
Show

 ZFA:0001284 optic fissure optic fissure open , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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