ENSDARG00000018494
Danio rerio | |
Features
| Gene ID: | ENSDARG00000018494 | | | | | Biological name : | smn1 | | | | | Synonyms : | Q9W6S8 / smn1 / survival of motor neuron 1, telomeric | | | | | Possible biological names infered from orthology : | P97801 / Q16637 / SMN2 / survival motor neuron 1 / survival of motor neuron 2, centromeric | | | | | Species: | Danio rerio | | | | | Chr. number: | 5 | | Strand: | -1 | | Band: | | | Gene start: | 43798345 | | Gene end: | 43805610 | | | | | Corresponding Affymetrix probe sets: | Dr.800.1.S1_at (Zebrafish Array) NM_131191_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000017636
Ensembl peptide - ENSDARP00000105995
NCBI entrez gene - 30432
See in Manteia.
RefSeq - NM_131191
RefSeq Peptide - NP_571266
swissprot - F1QYJ3
swissprot - Q6P934
swissprot - Q9W6S8
ZFIN ID - ZDB-GENE-990715-16
Ensembl - ENSDARG00000018494
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
No match
Protein motifs (from Interpro)
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000112 | gut | gut constricted , abnormal |
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| | ZFA:0000200 | dorsal root ganglion | dorsal root ganglion decreased amount , abnormal
dorsal root ganglion has fewer parts of type neuron , abnormal
dorsal root ganglion axon morphology , abnormal
dorsal root ganglion neuron decreased amount , abnormal |
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| | ZFA:0000543 | medial longitudinal fasciculus | medial longitudinal fasciculus dendrite decreased length , abnormal |
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| | ZFA:0001056 | myotome | myotome neuromuscular junction physical object quality , abnormal |
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| | ZFA:0001094 | whole organism | whole organism lethal (sensu genetics) , abnormal
whole organism decreased amount , abnormal
whole organism decreased length , abnormal
whole organism dead , abnormal
whole organism mitochondrion decreased functionality , abnormal
whole organism ATP generation from ADP decreased efficacy , abnormal
whole organism aerobic respiration decreased efficacy , abnormal
whole organism absent , abnormal |
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| | ZFA:0009052 | motor neuron | motor neuron axon morphology , abnormal
motor neuron axon truncated , abnormal
motor neuron axon increased branchiness , abnormal
motor neuron dendrite decreased length , abnormal
motor neuron dendrite decreased amount , abnormal
motor neuron morphology , abnormal
motor neuron presynaptic active zone physical object quality , abnormal
motor neuron decreased amount , abnormal
motor neuron axon absent , abnormal
motor neuron axon bifurcated , abnormal
motor neuron axon branchiness , abnormal
motor neuron axon mislocalised , abnormal
motor neuron axon branched , abnormal
motor neuron axon extension disrupted , abnormal
motor neuron axon decreased length , abnormal
motor neuron axon extension process quality , abnormal
motor neuron axon decreased branchiness , abnormal
motor neuron dendrite morphology , abnormal
motor neuron node of Ranvier increased width , abnormal
motor neuron myelin sheath loose , abnormal |
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| | ZFA:0009117 | fast muscle cell | fast muscle cell neuromuscular synaptic transmission decreased process quality , abnormal
fast muscle cell neuromuscular junction development decreased process quality , abnormal
fast muscle cell neuromuscular junction decreased width , abnormal
fast muscle cell synaptic cleft decreased width , abnormal
fast muscle cell neuromuscular synaptic transmission process quality , ameliorated
fast muscle cell neuromuscular junction development process quality , ameliorated
fast muscle cell neuromuscular junction width , ameliorated
fast muscle cell synaptic cleft width , ameliorated |
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| | ZFA:0009135 | myelinating Schwann cell | myelinating Schwann cell structure , abnormal |
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| | ZFA:0009243 | CaP motoneuron | CaP motoneuron filopodium decreased amount , abnormal
CaP motoneuron axon decreased branchiness , abnormal
CaP motoneuron morphology , abnormal
CaP motoneuron axon decreased length , abnormal
CaP motoneuron axon increased branchiness , abnormal
CaP motoneuron collateral sprouting increased occurrence , abnormal
CaP motoneuron axon extension involved in axon guidance decreased process quality , abnormal
CaP motoneuron axon branched , abnormal
CaP motoneuron axon truncated , abnormal
CaP motoneuron axon length , ameliorated
CaP motoneuron axon extension involved in axon guidance process quality , ameliorated |
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| | ZFA:0009244 | primary motor neuron | primary motor neuron axonogenesis disrupted , abnormal
primary motor neuron axonogenesis process efficacy , ameliorated
primary motor neuron axon length , ameliorated
primary motor neuron axon decreased length , abnormal
primary motor neuron axon terminus swollen , abnormal |
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Interacting proteins (from Reactome)
No match
0 s.
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