ENSDARG00000018618


Danio rerio
mrnacpsf6cleavagernafactornucleuscomplexbindingrecognitionmotifdomainspecificitysubunitcpsffamilyprocessingregulationexportproteinheterotetramerizationpre-mrnarequiredmessengerribonucleoproteinassemblynucleoplasmperichromatinfibrilscytoplasmnuclear

Features
Gene ID: ENSDARG00000018618
  
Biological name :cpsf6
  
Synonyms : cleavage and polyadenylation specific factor 6 / cpsf6 / Q6NWC6
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 6 / Q16630 / Q6NVF9
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 2041067
Gene end: 2059302
  
Corresponding Affymetrix probe sets: Dr.24219.7.S1_at (Zebrafish Array)   NM_001017993_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000076726
Ensembl peptide - ENSDARP00000110285
Ensembl peptide - ENSDARP00000116293
Ensembl peptide - ENSDARP00000125580
Ensembl peptide - ENSDARP00000145832
NCBI entrez gene - 327069     See in Manteia.
RefSeq - NM_001017993
RefSeq Peptide - NP_001017993
swissprot - H0WFE8
swissprot - Q1L8Q3
swissprot - Q6NWC6
ZFIN ID - ZDB-GENE-030131-5277
Ensembl - ENSDARG00000018618
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPSF6ENSGALG00000019355Gallus gallus
 CPSF6ENSG00000111605Homo sapiens
 Cpsf6ENSMUSG00000055531Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034769  Cleavage and polyadenylation specificity factor subunit 6
 IPR034772  CPSF6/7 family


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processmacromolecule localizationestablishment of localizationcellular localizationcellular component organizationcellular component biogenesisnitrogen compounitrogen compound metabolic processcellular metabocellular metabolic processprimary metabolprimary metabolic processorganic substanorganic substance metabolic processmacromolecule lmacromolecule localizationestablishment oestablishment of localizationcellular localicellular localizationcellular componcellular component organizationcellular componcellular component biogenesis
organic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingorganic cyclic compound bindingorganic cyclic compound bindingheterocyclic compound bindingheterocyclic compound binding
cellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellorganellemembrane-enclosed lumenprotein-containing complexcellcellorganelleorganellemembrane-enclosed lumenmembrane-enclosed lumenprotein-containing complexprotein-containing complex
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0046833 positive regulation of RNA export from nucleus ISS
 biological_processGO:0051290 protein heterotetramerization ISS
 biological_processGO:0098789 pre-mRNA cleavage required for polyadenylation ISS
 biological_processGO:1990120 messenger ribonucleoprotein complex assembly ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm ISS
 cellular_componentGO:0005726 perichromatin fibrils ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005849 mRNA cleavage factor complex IEA
 cellular_componentGO:0016607 nuclear speck ISS
 cellular_componentGO:0035061 interchromatin granule ISS
 cellular_componentGO:0042382 paraspeckles ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003729 mRNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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