ENSDARG00000020178


Danio rerio

Features
Gene ID: ENSDARG00000020178
  
Biological name :nova1
  
Synonyms : neuro-oncological ventral antigen 1 / nova1
  
Possible biological names infered from orthology : NOVA2 / NOVA alternative splicing regulator 2 / Q9UNW9
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 36611128
Gene end: 36626646
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000088454
Ensembl peptide - ENSDARP00000125127
NCBI entrez gene - 555590     See in Manteia.
RefSeq - NM_001044789
RefSeq Peptide - NP_001038254
swissprot - H0WE50
swissprot - Q1LYC7
ZFIN ID - ZDB-GENE-060526-113
Ensembl - ENSDARG00000020178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOVA2ENSG00000104967Homo sapiens
 Nova2ENSMUSG00000030411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767390
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437821
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703420
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427620
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903919
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891418
zgc:110045ENSDARG0000005714112
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG000001109618


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR015946  K homology domain-like, alpha/beta
 IPR033086  RNA-binding protein Nova-1
 IPR033087  RNA-binding protein Nova-2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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