ENSDARG00000020417


Danio rerio

Features
Gene ID: ENSDARG00000020417
  
Biological name :emx3
  
Synonyms : empty spiracles homeobox 3 / emx3
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 26363537
Gene end: 26377044
  
Corresponding Affymetrix probe sets: Dr.534.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000018933
swissprot - F1QFR3
ZFIN ID - ZDB-GENE-990415-53
Ensembl - ENSDARG00000020417
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
emx1 / Q804S6 / empty spiracles homeobox 1ENSDARG0000003956962
emx2 / empty spiracles homeobox 2 / Q04743* / Q04744* / Homeobox protein EMX2 *ENSDARG0000003970162
vax1 / ventral anterior homeobox 1 / Q2NKI2* / Q5SQQ9*ENSDARG0000002191621
vax2 / Q801E1 / ventral anterior homeobox 2 / Q9UIW0* / Q9WTP9*ENSDARG0000005870221
noto / notochord homeobox / A8MTQ0* / Q5TIS6* / Homeobox protein notochord *ENSDARG0000002120120
en1b / engrailed homeobox 1b / EN1* / P09065* / Q05925* / engrailed homeobox 1* / Homeobox protein engrailed-1 *ENSDARG0000009873019
en2a / P09015 / engrailed homeobox 2a / EN2* / P09066* / P19622* / engrailed homeobox 2* / Homeobox protein engrailed-2 *ENSDARG0000002659918
en2b / engrailed homeobox 2b / EN2* / P09066* / P19622* / engrailed homeobox 2* / Homeobox protein engrailed-2 *ENSDARG0000003886818
en1a / engrailed homeobox 1a / EN1* / Q05925* / engrailed homeobox 1*ENSDARG0000001432117


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007420 brain development IEP
 biological_processGO:0021537 telencephalon development IMP
 biological_processGO:0021862 early neuron differentiation in forebrain IMP
 biological_processGO:0021952 central nervous system projection neuron axonogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000079 telencephalon telencephalon ventricular zone increased width , abnormal
Show

 ZFA:0000249 cranial nerve I cranial nerve I defasciculated , abnormal
Show

 ZFA:0000357 glomerular layer glomerular layer decreased size , abnormal
Show

 ZFA:0000505 dorsal telencephalon dorsal telencephalon morphology , abnormal
Show

 ZFA:0001108 anterior commissure anterior commissure aplastic , abnormal
Show

 ZFA:0001657 supraoptic tract supraoptic tract decreased thickness , abnormal
supraoptic tract fasciculation , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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