ENSDARG00000021378


Danio rerio

Features
Gene ID: ENSDARG00000021378
  
Biological name :phf21ab
  
Synonyms : PHD finger protein 21Ab / phf21ab
  
Possible biological names infered from orthology : PHD finger protein 21A / PHD finger protein 21A isoform 4 / PHF21A / Q96BD5
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 7718967
Gene end: 7764083
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000114626
Ensembl peptide - ENSDARP00000153243
Ensembl peptide - ENSDARP00000150633
Ensembl peptide - ENSDARP00000122872
Ensembl peptide - ENSDARP00000019987
Ensembl peptide - ENSDARP00000111141
NCBI entrez gene - 565544     See in Manteia.
swissprot - E9QJJ9
swissprot - E7F750
swissprot - E7F4A6
swissprot - F1QI40
ZFIN ID - ZDB-GENE-030131-6456
Ensembl - ENSDARG00000021378
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PHF21AENSGALG00000008403Gallus gallus
 PHF21AENSG00000135365Homo sapiens
 Phf21aENSMUSG00000058318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
phf21aa / PHD finger protein 21AaENSDARG0000000687825
PHF21B / PHD finger protein 21B / Q96EK2*ENSDARG0000010950216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0060324 face development IMP
 cellular_componentGO:0000118 histone deacetylase complex IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003682 chromatin binding IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA
 molecular_functionGO:0042393 histone binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism curved ventral , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage deformed , abnormal
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 ZFA:0001273 ventral mandibular arch ventral mandibular arch decreased size , abnormal
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 ZFA:0001306 pharyngeal arch pharyngeal arch capillary hypoplastic , abnormal
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 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage deformed , abnormal
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 ZFA:0005004 aortic arch aortic arch hypoplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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