ENSDARG00000021838


Danio rerio

Features
Gene ID: ENSDARG00000021838
  
Biological name :rps23
  
Synonyms : ribosomal protein S23 / rps23
  
Possible biological names infered from orthology : 40S ribosomal protein S23 / P62266 / P62267
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 42556395
Gene end: 42561215
  
Corresponding Affymetrix probe sets: Dr.1345.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000035273
NCBI entrez gene - 100000341     See in Manteia.
swissprot - A8KB78
ZFIN ID - ZDB-GENE-080220-50
Ensembl - ENSDARG00000021838
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS23ENSGALG00000015617Gallus gallus
 RPS23ENSG00000186468Homo sapiens
 Rps23ENSMUSG00000049517Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005680  Ribosomal protein S23, eukaryotic/archaeal
 IPR006032  Ribosomal protein S12/S23
 IPR012340  Nucleic acid-binding, OB-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015935 small ribosomal subunit IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr