ENSDARG00000024306


Danio rerio

Features
Gene ID: ENSDARG00000024306
  
Biological name :zbed4
  
Synonyms : zbed4 / zinc finger, BED-type containing 4
  
Possible biological names infered from orthology : O75132 / Q80WQ9
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 27112399
Gene end: 27129697
  
Corresponding Affymetrix probe sets: Dr.17906.1.A1_at (Zebrafish Array)   Dr.17906.2.S1_at (Zebrafish Array)   NM_001082941_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000033717
Ensembl peptide - ENSDARP00000115355
NCBI entrez gene - 100000808     See in Manteia.
RefSeq - XM_005168533
RefSeq - NM_001082941
RefSeq Peptide - NP_001076410
swissprot - Q5RFV1
ZFIN ID - ZDB-GENE-041210-305
Ensembl - ENSDARG00000024306
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ZBED4ENSGALG00000032659Gallus gallus
 ZBED4ENSG00000100426Homo sapiens
 Zbed4ENSMUSG00000034333Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-117b8.4ENSDARG0000009421410
si:ch211-152f22.4ENSDARG000000909107


Protein motifs (from Interpro)
Interpro ID Name
 IPR003656  Zinc finger, BED-type
 IPR008906  HAT, C-terminal dimerisation domain
 IPR012337  Ribonuclease H-like superfamily
 IPR013087  Zinc finger C2H2-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IBA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr