ENSDARG00000024416


Danio rerio

Features
Gene ID: ENSDARG00000024416
  
Biological name :twistnb
  
Synonyms : twistnb / TWIST neighbor
  
Possible biological names infered from orthology : Q3B726 / Q78WZ7 / twist basic helix-loop-helix transcription factor 1 neighbor
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 2395114
Gene end: 2404599
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000104602
swissprot - F1R1A1
ZFIN ID - ZDB-GENE-041007-3
Ensembl - ENSDARG00000024416
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TWISTNBENSGALG00000010863Gallus gallus
 Q3B726ENSG00000105849Homo sapiens
 Q78WZ7ENSMUSG00000020561Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005576  RNA polymerase Rpb7, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
brain morphology , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000029 hindbrain hindbrain axon morphology , abnormal
hindbrain radial glial cell morphology , abnormal
hindbrain radial glial cell mislocalised , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000059 postoptic commissure postoptic commissure defasciculated , abnormal
postoptic commissure has fewer parts of type astrocyte , abnormal
postoptic commissure commissural neuron axon guidance disrupted , abnormal
postoptic commissure astrocyte mislocalised , abnormal
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 ZFA:0000075 spinal cord spinal cord lacks all parts of type ventricular zone radial glial cell, abnormal
Show

 ZFA:0000084 yolk yolk non-functional , abnormal
yolk swollen , abnormal
yolk circular , abnormal
yolk grey , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000109 forebrain forebrain commissural neuron axon guidance disrupted , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000435 cranial nerve II cranial nerve II absent , abnormal
cranial nerve II decreased size , abnormal
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 ZFA:0001094 whole organism whole organism bent , abnormal
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 ZFA:0001108 anterior commissure anterior commissure defasciculated , abnormal
anterior commissure has fewer parts of type astrocyte , abnormal
anterior commissure commissural neuron axon guidance disrupted , abnormal
anterior commissure astrocyte mislocalised , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk has fewer parts of type motor neuron axon, abnormal
trunk has fewer parts of type nerve glial cell (sensu Vertebrata), abnormal
trunk nerve truncated , abnormal
trunk decreased thickness , abnormal
trunk curved ventral , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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