ENSDARG00000024693


Danio rerio

Features
Gene ID: ENSDARG00000024693
  
Biological name :lysmd3
  
Synonyms : lysmd3 / LysM, putative peptidoglycan-binding, domain containing 3
  
Possible biological names infered from orthology : LysM and putative peptidoglycan-binding domain-containing protein 3 / LysM domain containing 3 / Q7Z3D4 / Q99LE3
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 48672553
Gene end: 48680580
  
Corresponding Affymetrix probe sets: Dr.246.1.A1_at (Zebrafish Array)   NM_001002104_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000038848
NCBI entrez gene - 415194     See in Manteia.
RefSeq - NM_001002104
RefSeq Peptide - NP_001002104
swissprot - B0R0T4
ZFIN ID - ZDB-GENE-040625-88
Ensembl - ENSDARG00000024693
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LYSMD3ENSGALG00000014651Gallus gallus
 LYSMD3ENSG00000176018Homo sapiens
 Lysmd3ENSMUSG00000035840Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6P606 / lysmd4 / LysM, putative peptidoglycan-binding, domain containing 4 / Q8CC84* / Q5XG99* / LysM domain containing 4* / Mus musculus LysM, putative peptidoglycan-binding, domain conta...ENSDARG0000006870228


Protein motifs (from Interpro)
Interpro ID Name
 IPR018392  LysM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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