ENSDARG00000025309


Danio rerio

Features
Gene ID: ENSDARG00000025309
  
Biological name :dpf3
  
Synonyms : A9LMC0 / D4, zinc and double PHD fingers, family 3 / dpf3
  
Possible biological names infered from orthology : double PHD fingers 3 / P58269 / Q92784 / Zinc finger protein DPF3
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 28434196
Gene end: 28501429
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000032706
NCBI entrez gene - 562738     See in Manteia.
swissprot - A9LMC0
swissprot - G8JL12
ZFIN ID - ZDB-GENE-041014-190
Ensembl - ENSDARG00000025309
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DPF3ENSGALG00000009352Gallus gallus
 DPF3ENSG00000205683Homo sapiens
 Dpf3ENSMUSG00000021221Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
dpf1 / D4, zinc and double PHD fingers family 1 / Q92782* / Q9QX66* / double PHD fingers 1* / Zinc finger protein neuro-d4 *ENSDARG0000009992760
dpf2 / D4, zinc and double PHD fingers family 2 / Q61103* / Q92785* / double PHD fingers 2* / Zinc finger protein ubi-d4 *ENSDARG0000001221958
dpf2l / D4, zinc and double PHD fingers family 2, like / DPF2* / Q61103* / Q92785* / double PHD fingers 2* / Zinc finger protein ubi-d4 *ENSDARG0000003729157
phf10 / PHD finger protein 10 / Q8WUB8*ENSDARG0000007008417


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019787  Zinc finger, PHD-finger
 IPR025750  Requiem/DPF N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IMP
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0048644 muscle organ morphogenesis IMP
 biological_processGO:0055008 cardiac muscle tissue morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016514 SWI/SNF complex ISS
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042393 histone binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000114 heart heart malformed , abnormal
Show

 ZFA:0000610 vertical myoseptum vertical myoseptum malformed , abnormal
Show

 ZFA:0001056 myotome myotome malformed , abnormal
myotome skeletal muscle cell disorganized , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved dorsal , abnormal
Show

 ZFA:0009115 skeletal muscle cell skeletal muscle cell sarcomere disorganized , abnormal
Show

 ZFA:0009316 cardiac muscle cell cardiac muscle cell sarcomere disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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