ENSDARG00000025718


Danio rerio

Features
Gene ID: ENSDARG00000025718
  
Biological name :cxxc1b
  
Synonyms : cxxc1b / CXXC finger protein 1b
  
Possible biological names infered from orthology : CXXC1 / CXXC finger protein 1 / CXXC-type zinc finger protein 1 / Q9CWW7 / Q9P0U4
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 25539698
Gene end: 25550845
  
Corresponding Affymetrix probe sets: Dr.11991.1.S1_at (Zebrafish Array)   NM_200333_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032784
NCBI entrez gene - 360150     See in Manteia.
RefSeq - NM_200333
RefSeq Peptide - NP_956627
swissprot - F1QXL1
ZFIN ID - ZDB-GENE-030728-4
Ensembl - ENSDARG00000025718
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CXXC1ENSG00000154832Homo sapiens
 Cxxc1ENSMUSG00000024560Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cxxc1a / CXXC finger protein 1a / CXXC1* / Q9P0U4* / Q9CWW7* / CXXC finger protein 1* / CXXC-type zinc finger protein 1 *ENSDARG0000010199673


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR002857  Zinc finger, CXXC-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR022056  CpG binding protein, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001568 blood vessel development IMP
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0032776 DNA methylation on cytosine IMP
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0045322 unmethylated CpG binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood decreased amount , abnormal
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 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm apoptotic , abnormal
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 ZFA:0001079 blood vasculature blood vasculature decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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