ENSDARG00000025948
Danio rerio | |
Features
| Gene ID: | ENSDARG00000025948 | | | | | Biological name : | mlh1 | | | | | Synonyms : | mlh1 / mutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli) | | | | | Possible biological names infered from orthology : | DNA mismatch repair protein Mlh1 / mutL homolog 1 / P40692 / Q9JK91 | | | | | Species: | Danio rerio | | | | | Chr. number: | 13 | | Strand: | 1 | | Band: | | | Gene start: | 42602406 | | Gene end: | 42617639 | | | | | Corresponding Affymetrix probe sets: | Dr.13195.1.A1_at (Zebrafish Array) NM_200659_at (Zebrafish Genome Array with custom cdf files) | | | | | Cross references: | Ensembl peptide - ENSDARP00000113460
Ensembl peptide - ENSDARP00000121589
NCBI entrez gene - 393632
See in Manteia.
RefSeq - NM_200659
RefSeq Peptide - NP_956953
swissprot - B8A6F5
swissprot - B8A6F4
ZFIN ID - ZDB-GENE-040426-1600
Ensembl - ENSDARG00000025948
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See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed
Ortholog prediction (from Ensembl)
Paralog prediction (from Ensembl)
No match
Protein motifs (from Interpro)
| IPR002099 | DNA mismatch repair protein family, N-terminal | | IPR003594 | Histidine kinase/HSP90-like ATPase | | IPR013507 | DNA mismatch repair protein, S5 domain 2-like | | IPR014721 | Ribosomal protein S5 domain 2-type fold, subgroup | | IPR014762 | DNA mismatch repair, conserved site | | IPR020568 | Ribosomal protein S5 domain 2-type fold | | IPR032189 | DNA mismatch repair protein Mlh1, C-terminal |
Gene Ontology (GO)
Pathways (from Reactome)
Phenotype (from MGI, Zfin or HPO)
| ZFA:0000242 | male organism | male organism male sterile , abnormal
male organism decreased male fertility , abnormal
male organism triploid , abnormal |
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| | ZFA:0000303 | female organism | female organism lethal (sensu genetics) , abnormal
female organism aneuploid , abnormal |
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| | ZFA:0000598 | testis | testis increased weight , abnormal
testis apoptotic , abnormal |
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| | ZFA:0001094 | whole organism | whole organism neoplastic , abnormal
whole organism increased size , abnormal
whole organism apoptotic , abnormal
whole organism necrotic , abnormal
whole organism brood viability , abnormal
whole organism aneuploid , abnormal
whole organism deformed , abnormal |
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| | ZFA:0009005 | spermatocyte | spermatocyte decreased amount , abnormal
spermatocyte recombination nodule absent , abnormal
spermatocyte increased amount , abnormal |
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| | ZFA:0009006 | sperm | sperm absent , abnormal
sperm decreased amount , abnormal |
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| | ZFA:0009007 | spermatogonium | spermatogonium increased amount , abnormal |
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Interacting proteins (from Reactome)
No match
1 s.
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