ENSDARG00000026489


Danio rerio

Features
Gene ID: ENSDARG00000026489
  
Biological name :khsrp
  
Synonyms : khsrp / KH-type splicing regulatory protein
  
Possible biological names infered from orthology : Q3U0V1 / Q92945
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 54960189
Gene end: 54972236
  
Corresponding Affymetrix probe sets: Dr.9445.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120919
Ensembl peptide - ENSDARP00000125251
Ensembl peptide - ENSDARP00000032748
NCBI entrez gene - 573145     See in Manteia.
RefSeq - NM_001089428
RefSeq - XM_005160179
RefSeq Peptide - NP_001082897
swissprot - F1QXP8
swissprot - E9QIA6
swissprot - H0WEH3
ZFIN ID - ZDB-GENE-030131-4357
Ensembl - ENSDARG00000026489
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KHSRPENSG00000088247Homo sapiens
 KhsrpENSMUSG00000007670Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
fubp1 / far upstream element (FUSE) binding protein 1 / Q91WJ8* / Q96AE4* / far upstream element binding protein 1* / Mus musculus far upstream element (FUSE) binding protein 1 (Fubp1), tra...ENSDARG0000002924855
fubp3 / far upstream element (FUSE) binding protein 3 / Q96I24* / far upstream element binding protein 3*ENSDARG0000008689642


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR009019  K homology domain superfamily, prokaryotic type
 IPR015096  Far upstream element-binding protein, C-terminal
 IPR015946  K homology domain-like, alpha/beta


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
KSRP (KHSRP) binds and destabilizes mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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