ENSDARG00000026806


Danio rerio

Features
Gene ID: ENSDARG00000026806
  
Biological name :taf8
  
Synonyms : Q6P0T2 / taf8 / TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Q7Z7C8 / Q9EQH4 / TATA-box binding protein associated factor 8 / Transcription initiation factor TFIID subunit 8
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 32392461
Gene end: 32423348
  
Corresponding Affymetrix probe sets: Dr.7833.1.S1_at (Zebrafish Array)   NM_200286_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130755
Ensembl peptide - ENSDARP00000133427
Ensembl peptide - ENSDARP00000131962
Ensembl peptide - ENSDARP00000032165
NCBI entrez gene - 393256     See in Manteia.
RefSeq - NM_200286
RefSeq Peptide - NP_956580
swissprot - A0A0R4II79
swissprot - A0A0R4I9Y0
swissprot - Q6P0T2
ZFIN ID - ZDB-GENE-040426-1013
Ensembl - ENSDARG00000026806
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF8ENSGALG00000003498Gallus gallus
 TAF8ENSG00000137413Homo sapiens
 Taf8ENSMUSG00000023980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006565  Bromodomain associated domain
 IPR009072  Histone-fold
 IPR019473  Transcription factor TFIID, subunit 8, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001439 anatomical system anatomical system quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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