ENSDARG00000027182


Danio rerio
zincfingerproteinactivityrnf25ring-typerwddomainringfyvephd-typeubiquitin-conjugatingenzymerwd-likeregulationnf-kappabtranscriptionfactornucleusubiquitinligaseantigenprocessingproteasomedegradationcaudalfinwholeorganismembryonic

Features
Gene ID: ENSDARG00000027182
  
Biological name :rnf25
  
Synonyms : ring finger protein 25 / rnf25
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase RNF25 / Q96BH1 / Q9QZR0
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 32671146
Gene end: 32680126
  
Corresponding Affymetrix probe sets: Dr.16663.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000038815
NCBI entrez gene - 100003846     See in Manteia.
RefSeq - NM_201183
RefSeq Peptide - NP_957477
swissprot - A9JRQ5
ZFIN ID - ZDB-GENE-040426-1581
Ensembl - ENSDARG00000027182
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNF25ENSGALG00000011375Gallus gallus
 RNF25ENSG00000163481Homo sapiens
 Rnf25ENSMUSG00000026171Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR006575  RWD domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR016135  Ubiquitin-conjugating enzyme/RWD-like


Gene Ontology (GO)
nitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabolic processcellular metabolic processprimary metabolic processorganic substance metabolic processbiosynthetic processregulation of molecular functionnitrogen compound metabnitrogen compound metabolic processcellular metabolic proccellular metabolic processprimary metabolic proceprimary metabolic processorganic substance metaborganic substance metabolic processbiosynthetic processbiosynthetic processregulation of molecularregulation of molecular function
catalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteintransferase activitycatalytic activity, acting on a proteincatalytic activity, acting on a proteintransferase activitytransferase activity
cellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellorganellecellcellorganelleorganelle
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IBA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001058 caudal fin caudal fin malformed , abnormal
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 ZFA:0001094 whole organism whole organism decreased amount , abnormal
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 ZFA:0001105 embryonic structure embryonic structure decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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