ENSDARG00000028937


Danio rerio

Features
Gene ID: ENSDARG00000028937
  
Biological name :taf1b
  
Synonyms : F1R3W0 / taf1b / TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B
  
Possible biological names infered from orthology : P97358 / Q53T94 / TATA-box binding protein associated factor, RNA polymerase I, B / TATA-box binding protein associated factor, RNA polymerase I subunit B
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 29513470
Gene end: 29533010
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000049223
Ensembl peptide - ENSDARP00000062376
NCBI entrez gene - 449647     See in Manteia.
RefSeq - NM_001025298
RefSeq Peptide - NP_001020469
swissprot - F1R3W0
swissprot - A0A0A0MPI2
ZFIN ID - ZDB-GENE-041008-2
Ensembl - ENSDARG00000028937
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF1BENSGALG00000016437Gallus gallus
 TAF1BENSG00000115750Homo sapiens
 Taf1bENSMUSG00000059669Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR021752  Transcription initiation factor Rrn7, Zinc-finger
 IPR033599  RNA polymerase I transcription initiation factor TAF1B/Rrn7


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001188 RNA polymerase I transcriptional preinitiation complex assembly ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005668 RNA polymerase transcription factor SL1 complex IBA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0070860 RNA polymerase I core factor complex IBA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
Show

 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
Show

 ZFA:0001114 head head decreased width , abnormal
head pointed , abnormal
head decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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