ENSDARG00000028976


Danio rerio

Features
Gene ID: ENSDARG00000028976
  
Biological name :pus3
  
Synonyms : pseudouridylate synthase 3 / pus3
  
Possible biological names infered from orthology : Q9BZE2 / Q9JI38 / tRNA pseudouridine(38/39) synthase
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 36317544
Gene end: 36329800
  
Corresponding Affymetrix probe sets: Dr.8864.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000048639
Ensembl peptide - ENSDARP00000127947
swissprot - F1QBS4
swissprot - X1WCK3
ZFIN ID - ZDB-GENE-030131-9433
Ensembl - ENSDARG00000028976
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PUS3ENSGALG00000000962Gallus gallus
 PUS3ENSG00000110060Homo sapiens
 Pus3ENSMUSG00000032103Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001406  Pseudouridine synthase I, TruA
 IPR020095  Pseudouridine synthase I, TruA, C-terminal
 IPR020097  Pseudouridine synthase I, TruA, alpha/beta domain
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:0031119 tRNA pseudouridine synthesis IBA
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IEA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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